Introduction | Citing this package | Getting help | Quick start guide | Case study: static experiment | Case study: independent time course experiment | Case study: longitudinal time course experiment | sva: Surrogate variable analysis | qvalue: Estimate the q-values | Advanced topic: Using the ExpressionSet object

Introduction | Citing this package | Getting help | Quick start guide | Case study: differential gene expression | Point-and-click implementation | Frequently asked questions | Obtaining updates on qvalue

Overview | Introduction | Basic Usage | Diagnosing the snm output | Simulation Details